STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1854Conserved hypothetical protein; Identified by Glimmer2; putative. (289 aa)    
Predicted Functional Partners:
ABO_1855
(conserved hypothetical protein) identified by sequencesimilarity; putative.
 
     0.918
ABO_1853
(sensor histidine kinase/response regulator, putative) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership.
  
    0.842
ABO_1001
BNR domain protein; Identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat Uncharacterized protein related to plant photosystem II stability; Family membership.
  
    0.584
der
GTP-binding protein, putative; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.525
ABO_1762
Hypothetical protein; Identified by sequence similarity.
  
     0.519
ABO_1002
Membrane protein, putative; Identified by sequence similarity; putative InterPro: HMGCR/Patched 5TM box; conserved hypothetical protein.
  
    0.503
ABO_1000
Conserved hypothetical protein.
  
    0.502
ABO_1915
Conserved hypothetical protein, by combining results from PsiBlast SP, Blast2p vs KEGG, PsiBlast Putida, InterPro, Blast2p vs COG, TIGRFAM.
  
     0.496
ABO_1647
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440; Family membership.
  
     0.459
ABO_0999
Conserved hypothetical protein.
  
  
 0.450
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.