STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
pilFType IV pili biogenesis protein PilF; Identified by match to PFAM protein family HMMPF00515 InterPro: TPR repeat; Family membership. (261 aa)    
Predicted Functional Partners:
ABO_1861
Conserved hypothetical protein.
  
  
 0.861
rlmN
Conserved Fe-S-cluster redox protein, putative; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.835
pilO
Type 4 fimbrial biogenesis protein pilO.
  
   
 0.814
pilQ
Fimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein.
 
   
 0.809
pilM
Type IV fimbrial biogenesis protein PilM.
 
   
 0.788
pilN-2
Type IV pili biogenesis protein PilN.
  
  
 0.785
ispG
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
    0.769
pilP
Type 4 fimbrial biogenesis protein PilP.
  
   
 0.764
ABO_0132
LysM domain protein; Region start changed from 142733 to 142994 (-261 bases).
  
   
 0.701
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.631
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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