STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iscAIron-binding protein IscA; Identified by sequence similarity; putative InterPro: Hypothetical hesB/yadR/yfhF family; Family membership; Belongs to the HesB/IscA family. (119 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase; Identified by sequence similarity; putative identified by match to PFAM potein family HMMPF00266; putative InterPro: Aminotransferase class-V; High confidence in function and specificity.
 
 
 0.925
aapB
ATP-binding protein of ABC-transporter; ABC-type transport system involved in Fe-S cluster assembly, ATPase component; High confidence in function and specificity.
  
 
 0.836
sufD
Permease component of ABC-tranporter; High confidence in function and specificity; conserved hypothetical protein, putative ABC transporter permease component, possibly involved in Fe-S cluster assembly.
  
 
 0.825
fdx
Ferredoxin, 2Fe-2S; Identified by sequencesimilarity; putative InterPro: Ferredoxin; Family membership.
  
 0.816
ABO_1870
Metal-sulfur cluster biosynthetic enzyme, putative; Family membership.
  
  
 0.802
ABO_1865
ABC-type transport system involved in Fe-S cluster assembly, permease component; High confidence in function and specificity.
  
 
 0.772
rrf2
Rrf2 family protein; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins.
  
  
 0.743
sufE
Fe-S metabolism associated domain protein; SufE protein probably involved in Fe-S center assembly; Family membership.
  
  
 0.720
csdA
Cysteine sulfinate desulfinase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.712
dnaK
Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.628
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.