Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sufEFe-S metabolism associated domain protein; SufE protein probably involved in Fe-S center assembly; Family membership. (150 aa)    
Predicted Functional Partners:
csdA
Cysteine sulfinate desulfinase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.994
ABO_1865
ABC-type transport system involved in Fe-S cluster assembly, permease component; High confidence in function and specificity.
 
 0.961
aapB
ATP-binding protein of ABC-transporter; ABC-type transport system involved in Fe-S cluster assembly, ATPase component; High confidence in function and specificity.
 
 0.959
sufD
Permease component of ABC-tranporter; High confidence in function and specificity; conserved hypothetical protein, putative ABC transporter permease component, possibly involved in Fe-S cluster assembly.
 
 0.933
ABO_1081
(aminotransferase, putative) identified by sequencesimilarity; putative InterPro: Aminotransferase class-V; Family membership.
  
 
 0.804
ABO_1870
Metal-sulfur cluster biosynthetic enzyme, putative; Family membership.
 
   
 0.772
iscA
Iron-binding protein IscA; Identified by sequence similarity; putative InterPro: Hypothetical hesB/yadR/yfhF family; Family membership; Belongs to the HesB/IscA family.
  
  
 0.720
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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