STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1878Conserved hypothetical protein distantly. (330 aa)    
Predicted Functional Partners:
ABO_1876
SIR2 family protein; NAD-dependent protein deacetylases, SIR2 family; SIR2-like transcriptional silencer protein identified by match to PFAM protein family HMMPF02146; Family membership.
 
     0.936
cpdB;
(cpdB) (2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (5`-nucleotidase)) identified by sequence similarity; putative InterPro: 5-Nucleotidase; Family membership; Belongs to the 5'-nucleotidase family.
 
  
 0.916
ABO_0278
Identified by match to PFAM protein family HMMPF00702 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership.
    
 0.902
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
 0.902
ABO_0477
Conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
    
  0.901
ABO_1438
5'-nucleotidase; 5-nucleotidase putative identified by sequencesimilarity; putative; conserved hypothetical protein.
     
  0.900
ABO_1877
Ham1 family protein; Identified by match to TIGR protein family HMMTIGR00042 InterPro: Ham1 family; Family membership.
 
   
 0.820
guaA-2
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.570
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.