Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1879Conserved hypothetical protein; Identify by sequence similarity. (220 aa)    
Predicted Functional Partners:
algU
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; (RNA polymerase sigma-H factor AlgT) identified by sequence similarity; putative InterPro: Sigma factor ECF subfamily; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.427
rpoE
(rna polymerase sigma-e factor (sigma-24).) identified by sequence similarity; putative InterPro: Sigma factor ECF subfamily; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.427
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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