Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_1887Sulfonate ABC transporter periplasmic-binding protein; Identified by sequence similarity; Specificity unclear. (354 aa)    
Predicted Functional Partners:
ABO_1888
Sulfonate ABC transporter permease protein; Identified by sequence similarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Specificity unclear.
 
 
 0.969
ABO_1889
Sulfonate ABC transporter ATP-binding protein; Specificity unclear.
 
 
 0.967
ABO_1890
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF00595.
 
     0.889
ABO_1891
Conserved hypothetical protein.
 
     0.860
uahA
Urea carboxylase/allophanate hydrolase; Urea carboxylase; urease (ATP-hydrolysing); urea amidolyase/allophanate hydrolase [EC:6.3.4.6 3.5.1.54] identified by sequence similarity; putative InterPro: DUF183; Family membership.
 
   
 0.832
nrtB
Nitrate ABC transporter permease protein; Identified by sequencesimilarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership.
 
 
 0.717
ABO_2506
(amidase family protein, putative) identified by sequencesimilarity; putative InterPro: Amidase; Family membership.
 
  
 0.717
nasD
Nitrate transporter ATPase component NasD; High confidence in function and specificity.
  
 
 0.680
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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