Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1904(Sco1/SenC family protein) identified by match to PFAM protein family HMMPF00578. (204 aa)    
Predicted Functional Partners:
ABO_1903
Conserved hypothetical protein.
 
 
 0.983
ctaA
Cytochrome c oxidase assembly protein; Identified by similarity to Pfam protein family PF02628; High confidence in function and specificity.
 
 0.974
ctaG
Cytochrome c oxidase assembly protein; Identified by sequence similarity; putative; Function unclear.
 
 0.923
idsA
Prenyltransferase family, putative; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.896
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.877
ABO_2033
InterPro: SURF1 family; Family membership.
  
 
 0.667
cyoA
Cytochrome o ubiquinol oxidase, subunit II; Identified by sequence similarity; putative InterPro: Cu(A) centre of cytochrome c oxidase subunit II and nitrous oxide reductase; High confidence in function and specificity.
  
 0.633
coxA
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.567
ABO_1902
(conserved hypothetical protein) identified by sequencesimilarity; putative.
       0.564
ABO_1907
Conserved hypothetical protein; (membrane protein putative) identified by sequence similarity; putative; Function unclear.
  
    0.526
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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