Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1907Conserved hypothetical protein; (membrane protein putative) identified by sequence similarity; putative; Function unclear. (151 aa)    
Predicted Functional Partners:
ABO_0810
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.665
ctaA
Cytochrome c oxidase assembly protein; Identified by similarity to Pfam protein family PF02628; High confidence in function and specificity.
 
     0.614
idsA
Prenyltransferase family, putative; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.529
ABO_1903
Conserved hypothetical protein.
       0.526
ABO_1904
(Sco1/SenC family protein) identified by match to PFAM protein family HMMPF00578.
  
    0.526
ABO_1908
Conserved hypothetical protein; (ThiJ/PfpI family protein) identified by match to TIGR protein family HMMTIGR01382 conserved hypothetical protein with similarity to (ThiJ/PfpI family protein).
       0.498
ABO_1909
(protease, putative) identified by match to PFAM protein family HMMPF04066 InterPro: Peptidase family M48; Family membership.
       0.483
lip
Lipase; Identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site; High confidence in function and specificity.
  
     0.403
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.