STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1915Conserved hypothetical protein, by combining results from PsiBlast SP, Blast2p vs KEGG, PsiBlast Putida, InterPro, Blast2p vs COG, TIGRFAM. (436 aa)    
Predicted Functional Partners:
ABO_1914
Hypothetical protein predicted by Glimmer/Critica; High confidence in function and specificity.
       0.838
ABO_1110
Phosphoglycerol transferase; (conserved hypothetical protein) identified by match to PFAM protein family HMMPF04185 InterPro: Sulfatase.
 
     0.677
ABO_1913
Sodium solute transporter family protein; Identified by match to TIGRFAM protein family HMMTIGR00813; putative InterPro: Sodium:solute symporter family; Family membership; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.521
ABO_1854
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
ABO_1916
(conserved hypothetical protein) identified by sequencesimilarity; putative.
       0.492
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.