STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1916(conserved hypothetical protein) identified by sequencesimilarity; putative. (263 aa)    
Predicted Functional Partners:
plsC1
1-acyl-sn-glycerol-3-phosphate acyltransferase; (plsC) identified by sequence similarity; putative InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); High confidence in function and specificity; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
       0.518
alkB2
Alkane-1-monooxygenase; Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C8-C16 hydrocarbons; Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.
  
     0.492
ABO_1914
Hypothetical protein predicted by Glimmer/Critica; High confidence in function and specificity.
       0.492
ABO_1915
Conserved hypothetical protein, by combining results from PsiBlast SP, Blast2p vs KEGG, PsiBlast Putida, InterPro, Blast2p vs COG, TIGRFAM.
       0.492
phaD
phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity.
  
     0.423
ABO_0085
GMC oxidoreductase family protein, putative; Identified by sequence similarity; identified by match to PFAM protein family HMMPF00732; putative InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership.
  
     0.413
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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