STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
acdS-2Identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (281 aa)    
Predicted Functional Partners:
ABO_1919
Hypothetical protein predicted by Glimmer/Critica; (heavy metal RND efflux outer membrane proteinCzcC family) identified by sequencesimilarity; putative.
  
  
 0.662
ABO_0990
Oxidoreductase identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    0.655
ABO_2480
Conserved hypothetical protein.
  
     0.590
ABO_0961
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.540
ABO_0188
Predicted metal-dependent hydrolase; conserved hypothetical protein.
  
     0.528
ABO_0282
Monooxygenase flavin-binding family identified by sequence similarity; putative InterPro: Flavin-containing monooxygenase (FMO); Family membership.
 
  
 0.525
ABO_0190
Monooxygenase, putative; (monooxygenase flavin-binding family) identified by sequence similarity; putative InterPro: Flavin-containing monooxygenase (FMO); Family membership.
 
  
 0.509
ABO_0197
Metal-dependent hydrolase, putative; Predicted metal-dependent hydrolase; conserved hypothetical protein.
  
     0.501
ABO_0181
Conserved hypothetical protein; Predicted metal-dependent hydrolase.
  
     0.499
ABO_2693
Conserved hypothetical protein.
  
     0.499
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.