STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1937Metal ion transporter; Identified by sequencesimilarity; putative InterPro: CBS domain; Function unclear. (295 aa)    
Predicted Functional Partners:
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.966
phoH
PhoH family protein; Identified by match to PFAM protein family HMMPF02562 InterPro: PhoH-like protein; High confidence in function and specificity.
  
  
 0.915
ABO_1938
Hypothetical protein predicted by Glimmer/Critica.
       0.778
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
    0.758
uspA
uspA identified by match to PFAM protein family HMMPF00582 InterPro: Universal stress protein (Usp); Family membership.
  
   
 0.684
ydaA
Universal stress protein family; Identified by sequencesimilarity; putative InterPro: Universal stress protein (Usp); Specificity unclear.
      
 0.598
ABO_1511
Identified by match to PFAM protein family HMMPF00582 InterPro: Universal stress protein (Usp); Family membership.
      
 0.598
mgtE
Magnesium transporter; Acts as a magnesium transporter.
  
   
 0.491
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
    0.478
hflC
Protease subunit HflC; HflC and HflK could regulate a protease.
  
    0.408
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.