Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dat(D-alanine aminotransferase, D-aspartate aminotransferase, D-amino acid aminotransferase, D-amino acid transaminase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01063 InterPro: Aminotransferases class-IV; High confidence in function and specificity. (294 aa)    
Predicted Functional Partners:
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.925
hisC-2
(histidinol-phosphate aminotransferase, imidazole acetol-phosphate transaminase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.923
hisC-1
(histidinol-phosphate aminotransferase, imidazole acetol-phosphate transaminase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; High confidence in function and specificity; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.910
ddlB
D-alanine-D-alanine ligase B; Cell wall formation.
   
 
 0.908
aspC
(aspartate aminotransferase, transaminase A) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; High confidence in function and specificity.
  
 
 0.902
ABO_1961
Conserved hypothetical protein; Belongs to the UPF0250 family.
  
    0.794
dacA
D-alanyl-D-alanine-carboxypeptidase; (D-alanyl-D-alanine carboxypeptidase) identified by sequencesimilarity; putative InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; High confidence in function and specificity; Belongs to the peptidase S11 family.
       0.719
pabC
4-amino-4-deoxychorismate lyase; Identified by sequence similarity; putative InterPro: Aminotransferases class-IV; High confidence in function and specificity.
  
     0.583
ilvD-1
Dihydroxy-acid dehydratase; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00920 InterPro: Dihydroxy-acid dehydratase; High confidence in function and specificity; Belongs to the IlvD/Edd family.
  
 
 0.516
ilvD2
Dihydroxy-acid dehydratase; (ilvD-2) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00920 InterPro: Dihydroxy-acid dehydratase; High confidence in function and specificity; Belongs to the IlvD/Edd family.
  
 
 0.516
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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