STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lipHLipase foldase; Identified by sequence similarity; putative; High confidence in function and specificity. (336 aa)    
Predicted Functional Partners:
lip
Lipase; Identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site; High confidence in function and specificity.
 
 
 0.973
ABO_1789
Conserved hypothetical protein.
  
     0.595
ABO_2553
Hypothetical protein; (lip) (lipase) identified by sequencesimilarity; putative InterPro: Esterase/lipase/thioesterase family active site.
 
 
 0.576
ABO_0738
Hypothetical protein.
  
     0.516
ABO_1607
Conserved hypothetical protein.
  
 
 0.425
ABO_2664
Conserved hypothetical protein; Shows some similarity (ca. 30) to secreted lipases.
  
 
 0.425
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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