STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1977Conserved domain protein; Identified by sequencesimilarity; putative; conserved hypothetical protein. (109 aa)    
Predicted Functional Partners:
fmdA
Formamidase (EC 3.5.1.49) (formamide amidohydrolase) InterPro: Acetamidase/Formamidase; High confidence in function and specificity.
 
     0.947
ABO_1986
Unknown EC_number 21.7.3.11; (two-component sensor histidine kinase protein, putative) identified by match to PFAM protein family HMMPF03596 InterPro: Permeases for cytosine/purines uracil thiamine allantoin; Family membership.
 
     0.800
luxR
DNA-binding response regulator, LuxR family; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
     0.764
ABO_1985
(ABC transporter, periplasmic substrate-binding protein putative) identified by sequence similarity; putative; Family membership.
 
     0.759
ABO_1983
(branched-chain amino acid ABC transporter,permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership.
 
     0.753
ABO_1981
(amino acid ABC transporter, ATP-binding protein, putative) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; Specificity unclear.
 
     0.730
ABO_1984
Branched-chain amino acid ABC transporter,permease protein; Identified by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
     0.724
livG
(branched-chain amino acid ABC transporter, ATP-binding protein) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; High confidence in function and specificity.
 
     0.723
aimE
Aliphatic amidase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.
 
     0.635
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.