STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
aimEAliphatic amidase; Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia. (348 aa)    
Predicted Functional Partners:
aldh1
Identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Specificity unclear.
   
 0.910
alkH
(aldehyde dehydrogenase family protein) identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity.
   
 0.910
amiC
Amidase family protein identified by sequencesimilarity; putative InterPro: Amidase; Specificity unclear; Belongs to the amidase family.
    
 0.901
ABO_2482
Amidase; Family membership; Belongs to the amidase family.
    
 0.901
acyP
Hydrolase (acting on acid anhydrides in phosphorus-containing anhydrides) by match to PFAM protein family HMMPF03475 InterPro: Acylphosphatase; Family membership.
     
  0.900
ABO_1979
(chaperone-associated ATPase, putative) identified by match to PFAM protein family HMMPF02861 InterPro: AAA ATPase superfamily; High confidence in function and specificity.
 
    0.864
ABO_1981
(amino acid ABC transporter, ATP-binding protein, putative) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; Specificity unclear.
 
     0.684
ABO_1983
(branched-chain amino acid ABC transporter,permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership.
 
     0.649
ABO_1986
Unknown EC_number 21.7.3.11; (two-component sensor histidine kinase protein, putative) identified by match to PFAM protein family HMMPF03596 InterPro: Permeases for cytosine/purines uracil thiamine allantoin; Family membership.
 
 
 0.636
ABO_1977
Conserved domain protein; Identified by sequencesimilarity; putative; conserved hypothetical protein.
 
     0.635
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.