STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_1983(branched-chain amino acid ABC transporter,permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership. (380 aa)    
Predicted Functional Partners:
ABO_1981
(amino acid ABC transporter, ATP-binding protein, putative) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; Specificity unclear.
 
 0.999
livG
(branched-chain amino acid ABC transporter, ATP-binding protein) identified by sequence similarity and by match to PFAM protein family HMMPF00005; putative InterPro: AAA ATPase superfamily; High confidence in function and specificity.
 
 0.999
ABO_1984
Branched-chain amino acid ABC transporter,permease protein; Identified by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
ABO_1985
(ABC transporter, periplasmic substrate-binding protein putative) identified by sequence similarity; putative; Family membership.
 
 
 0.996
ABO_2512
Branched-chain amino acid ABC transporter, ATP-binding protein, putative; Identified by match to PFAM protein family HMMPF00005 InterPro: ABC transporter; Specificity unclear.
 
 0.995
ABO_2513
Amino acid ABC transporter, ATP-binding protein; Identified by sequence similarity; putative identified by match to TIGR protein family HMMTIGR01187 InterPro: ABC transporter; Specificity unclear.
 
 0.994
ABO_2510
(branched-chain amino acid ABC transporter permease protein putative) identified by match to PFAM protein family HMMPF02653; putative; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 0.987
ABO_2509
(branched-chain amino acid ABC transporter, putative); identify by sequence similarity; Family membership.
 
 
 0.982
ABO_2511
(branched-chain amino acid ABC transporter permease protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Function unclear.
  
  
 
0.910
ABO_1986
Unknown EC_number 21.7.3.11; (two-component sensor histidine kinase protein, putative) identified by match to PFAM protein family HMMPF03596 InterPro: Permeases for cytosine/purines uracil thiamine allantoin; Family membership.
 
     0.777
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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