STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
luxRDNA-binding response regulator, LuxR family; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity. (301 aa)    
Predicted Functional Partners:
ABO_2520
Sensor histidin kinase, contains PAS-fold, HisKA and HATPase_c domains; conserved hypothetical protein.
 
 
 0.960
gacS
Sensor/response regulator hybrid; (sensor histidine kinase/response regulator GacS) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
0.933
ABO_2433
Conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain.
 
 
 0.921
ABO_2666
GAF/PAS/GGDEF domain protein; Identified by sequencesimilarity; putative InterPro: Domain of unknown function DUF9; Family membership.
 
 
 0.918
ABO_2691
Sensory box protein; Identified by match to PFAM protein family HMMPF03466 InterPro: Domain of unknown function 2; Function unclear.
 
 
 0.917
ABO_1986
Unknown EC_number 21.7.3.11; (two-component sensor histidine kinase protein, putative) identified by match to PFAM protein family HMMPF03596 InterPro: Permeases for cytosine/purines uracil thiamine allantoin; Family membership.
 
 
0.914
ABO_0715
GGDEF domain protein; Identified by match to PFAM protein family HMMPF00990; conserved hypothetical protein.
 
  
 0.905
ABO_2118
GGDEF domain protein; Identified by sequence similarity; putative InterPro: Domain of unknown function DUF9; Family membership.
 
 
  
 0.903
rre2
GGDEF domain protein; Identified by sequence similarity; putative InterPro: Domain of unknown function DUF9; High confidence in function and specificity.
 
 
  
 0.903
ABO_0716
GGDEF domain protein identified by sequencesimilarity; putative; conserved hypothetical protein.
 
 
  
 0.902
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.