Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
inaAInaA protein; Identify by sequence similarity; High confidence in function and specificity. (243 aa)    
Predicted Functional Partners:
ABO_1997
(hypothetical protein) identified by sequence similarity; putative InterPro: SAM (and some other nucleotide) binding motif.
       0.773
ABO_1084
Serine (threonine) protein kinase; (pnk) identified by sequencesimilarity; putative InterPro: Serine/Threonine protein kinase; High confidence in function and specificity.
   
 0.647
ABO_2006
(thioredoxin family protein, putative) identified by sequence similarity; putative InterPro: Thioredoxin; High confidence in function and specificity.
   
 0.577
ABO_2019
ATPase, AAA family; AAA-protein (ATPases associated with various cellular activities); Family membership.
   
 0.558
ABO_2000
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF00512 InterPro: Histidine kinase C-terminal; Family membership.
   
  0.535
ABO_0637
Putative membrane protein; Hypothetical protein, TMHMM: reporting 6 transmembrane helices.
    
 0.521
ABO_2083
Conserved hypothetical protein that shows an Ankyrin-repeat InterPro: Ankyrin-repeat.
    
 0.521
algK
(alginate biosynthesis regulator AlgK) identified by sequence similarity; putative InterPro: TPR repeat; High confidence in function and specificity.
    
 0.474
dnaJ
Heat shock protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
    
 0.471
cbpA
curved-DNA-binding protein DnaJ family identified by sequence similarity; putative InterPro: DnaJ C terminal domain; High confidence in function and specificity.
    
 0.471
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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