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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apbE-2Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (301 aa)    
Predicted Functional Partners:
ABO_2003
Conserved hypothetical protein.
 
     0.934
ABO_2005
Conserved hypothetical protein.
 
     0.920
ABO_2006
(thioredoxin family protein, putative) identified by sequence similarity; putative InterPro: Thioredoxin; High confidence in function and specificity.
 
     0.809
ABO_2001
(Transcriptional regulatory protein, putative) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Family membership.
       0.798
ABO_2000
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF00512 InterPro: Histidine kinase C-terminal; Family membership.
       0.782
ABO_1999
Putative membrane protein.
       0.773
ABO_2004
Conserved hypothetical protein.
       0.714
rnfD
Electron transport complex protein rnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
  
 0.582
rnfA
Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
  
 0.546
rnfE
Electron transport complex protein rnfE, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
   
 0.545
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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