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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2005Conserved hypothetical protein. (76 aa)    
Predicted Functional Partners:
ABO_2003
Conserved hypothetical protein.
 
     0.943
ABO_2006
(thioredoxin family protein, putative) identified by sequence similarity; putative InterPro: Thioredoxin; High confidence in function and specificity.
 
     0.934
apbE-2
Thiamine biosynthesis lipoprotein, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.920
ABO_2004
Conserved hypothetical protein.
       0.797
ABO_1999
Putative membrane protein.
 
     0.743
ABO_2000
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF00512 InterPro: Histidine kinase C-terminal; Family membership.
       0.687
ABO_2001
(Transcriptional regulatory protein, putative) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Family membership.
       0.684
ABO_0636
Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Rhomboid family shows homololgy to a Rhomboid-like protein. This family contains integral membrane proteins that arerelated to Drosophila rhomboid protein P20350. Members of this family are found in bacteria and eukaryotes. These proteins contain three strongly conserved histidines in the putative transmembrane regions that may be involved in the as yet unknown function of these proteins.
  
     0.579
dsbD
Thiol:disulfide interchange protein DsbD; Identified by match to PFAM protein family HMMPF00085 InterPro: Cytochrome c biogenesis protein transmembrane region; High confidence in function and specificity.
       0.563
ABO_0997
Conserved hypothetical protein.
  
     0.434
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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