STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2012Conserved hypothetical protein. (401 aa)    
Predicted Functional Partners:
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
  
     0.766
ABO_0370
Conserved hypothetical protein.
  
     0.766
ABO_1227
Conserved hypothetical protein.
  
     0.762
ABO_1464
Conserved hypothetical protein; Identified by sequence similarity.
  
     0.753
cheW
(chemotaxis protein, putative), pfam01584, CheW, CheW-like domain; conserved hypothetical protein.
  
     0.734
chpA
ChpA two-component hybrid sensor and regulator, putative identified by match to TIGR protein family HMMTIGR01387 InterPro: Histidine kinase C-terminal still frameshift probable component of chemotactic signal transduction system; Specificity unclear.
  
     0.696
ABO_1811
Two-component hybrid sensor and regulator; Identified by sequencesimilarity; putative InterPro: Hpt domain The N-terminal third of this protein harbours a hpt domain.Similarity to rpfC proteins does only rely on this domain. Usually, rpfC proteins are composed of a histidine kinase domain at the N-terminus, a response regulatory domain in the central part and an hpt domain at the C-terminus; Family membership.
  
     0.655
ABO_1440
Conserved hypothetical protein.
  
     0.636
ABO_2030
(conserved hypothetical protein) identified by Glimmer2; putative.
  
     0.632
ABO_2444
Conserved hypothetical protein.
  
     0.622
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.