STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2030(conserved hypothetical protein) identified by Glimmer2; putative. (113 aa)    
Predicted Functional Partners:
ABO_2029
Conserved hypothetical protein.
       0.807
ABO_2028
Hypothetical protein.
       0.776
ABO_1576
Conserved hypothetical protein.
  
     0.678
ABO_0352
Conserved hypothetical protein.
  
     0.675
ABO_2012
Conserved hypothetical protein.
  
     0.632
ABO_1440
Conserved hypothetical protein.
  
     0.616
ABO_1575
Conserved hypothetical protein.
  
     0.613
ABO_1464
Conserved hypothetical protein; Identified by sequence similarity.
  
     0.610
ABO_1452
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58.
  
     0.574
cheW
(chemotaxis protein, putative), pfam01584, CheW, CheW-like domain; conserved hypothetical protein.
  
     0.512
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.