STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2033InterPro: SURF1 family; Family membership. (239 aa)    
Predicted Functional Partners:
ABO_2032
(two-component, sensor histidine protein kinase, putative) identified by match to PFAM protein family HMMPF04093 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
     0.944
regR
Response regulator; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
     0.935
cyoD
Cytochrome o ubiquinol oxidase, protein CyoD; Identified by sequence similarity; putative; High confidence in function and specificity.
 
     0.923
cyoC
Identified by sequence similarity; putative InterPro: Cytochrome c oxidase subunit III catalytic activity: ubiquinol-8 + o(2) = ubiquinone-8 + h(2)o; High confidence in function and specificity.
 
  
 0.916
cyoA
Cytochrome o ubiquinol oxidase, subunit II; Identified by sequence similarity; putative InterPro: Cu(A) centre of cytochrome c oxidase subunit II and nitrous oxide reductase; High confidence in function and specificity.
 
 
 0.892
cyoB
Cytochrome c oxidase, subunit I; Identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase subunit I; High confidence in function and specificity; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.890
ABO_2038
(metabolite transport transmembrane protein, putative) identified by sequencesimilarity; putative InterPro: General substrate transporters; High confidence in function and specificity.
 
     0.832
ctaG
Cytochrome c oxidase assembly protein; Identified by sequence similarity; putative; Function unclear.
 
 
 0.741
ctaA
Cytochrome c oxidase assembly protein; Identified by similarity to Pfam protein family PF02628; High confidence in function and specificity.
  
 
 0.712
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.647
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.