STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2038(metabolite transport transmembrane protein, putative) identified by sequencesimilarity; putative InterPro: General substrate transporters; High confidence in function and specificity. (435 aa)    
Predicted Functional Partners:
cyoD
Cytochrome o ubiquinol oxidase, protein CyoD; Identified by sequence similarity; putative; High confidence in function and specificity.
 
   
 0.875
cyoA
Cytochrome o ubiquinol oxidase, subunit II; Identified by sequence similarity; putative InterPro: Cu(A) centre of cytochrome c oxidase subunit II and nitrous oxide reductase; High confidence in function and specificity.
 
   
 0.866
ABO_2033
InterPro: SURF1 family; Family membership.
 
     0.834
ABO_2032
(two-component, sensor histidine protein kinase, putative) identified by match to PFAM protein family HMMPF04093 InterPro: Histidine kinase C-terminal; High confidence in function and specificity.
 
     0.823
cyoC
Identified by sequence similarity; putative InterPro: Cytochrome c oxidase subunit III catalytic activity: ubiquinol-8 + o(2) = ubiquinone-8 + h(2)o; High confidence in function and specificity.
 
   
 0.800
regR
Response regulator; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
     0.739
cyoB
Cytochrome c oxidase, subunit I; Identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase subunit I; High confidence in function and specificity; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.654
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.