Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
ABO_2041Identified by match to PFAM protein family HMMPF00877 InterPro: NLP/P60; Function unclear. (200 aa)    
Predicted Functional Partners:
ftsX
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.790
rpe
Ribulose-phosphate 3-epimerase; Identified by match to TIGR protein family HMMTIGR01740 InterPro: Ribulose-phosphate 3-epimerase; High confidence in function and specificity.
     
 0.713
amiB
N-acetylmuramoyl-L-alanine amidase; Identified by sequencesimilarity; putative InterPro: Cell wall hydrolase/autolysin; High confidence in function and specificity.
  
  
 0.598
ABO_1527
OmpA family protein; InterPro: Bacterial outer membrane protein; Family membership.
 
 
 0.548
ABO_1332
(tail-specific protease prc) identified by sequence similarity; putative InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.
    
 
 0.546
ctpA
Carboxyl-terminal protease; Identified by match to PFAM protein family HMMPF03572 InterPro: Carboxyl-terminal protease; High confidence in function and specificity; Belongs to the peptidase S41A family.
    
 
 0.546
oppB
(oligopeptide ABC transporter, permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF00528; putative InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity.
      0.528
ABO_2043
Nucleotidyltransferase family protein; Identified by sequencesimilarity; putative InterPro: ADP-glucose pyrophosphorylase; Family membership.
       0.505
ABO_2044
Conserved hypothetical protein.
       0.504
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.502
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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