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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsU30S ribosomal protein S21; Identified by sequencesimilarity; putative InterPro: Ribosomal protein S21; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; Identified by sequencesimilarity; putative InterPro: Ribosomal protein L28; Function unclear; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.996
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.994
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.992
rpsP
(ribosomal protein S16) identified by sequence similarity; putative InterPro: Ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.990
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 
 0.989
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
 
 0.989
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.989
rpsB
30S ribosomal protein S2; Identified by sequencesimilarity; putative InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.989
rpmH
Ribosomal protein L34; Identified by match to PFAM protein family HMMPF00468 InterPro: Ribosomal protein L34; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.989
rpmG
Ribosomal protein L33; Identified by sequencesimilarity; putative InterPro: Ribosomal protein L33; Function unclear; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.988
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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