STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2088Ferric iron reductase protein, putative; (penicillin-binding protein 2) identified by match to PFAM protein family HMMPF00905; High confidence in function and specificity. (243 aa)    
Predicted Functional Partners:
ABO_2089
L-ornithine N5-oxygenase; Region start changed from 2380063 to 2380003 (-60 bases) region start changed to correct the mistake during contig update.
 
   
 0.877
tonB2
Ferric siderophore transport system,periplasmicbinding prot; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
    0.848
yojI
Pyoverdine ABC export systempermease/ATP-binding protein identified by sequence similarity; putative InterPro: ABC transporter transmembrane region; Family membership.
 
    0.828
foxA
(ferrioxamine receptor putative) identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
  
 0.773
iucB
Siderophore biosynthesis protein; Identify by sequence similarity; High confidence in function and specificity.
 
   
 0.705
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
   
    0.606
ABO_0757
Conserved hypothetical protein, has certain similarity to proline-rich C-terminus of TolA (PA0971) of Pseudomonas aeruginosa PAO1.
   
    0.606
ABO_2092
(peptide synthetase, putative); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.600
ABO_2093
Peptide synthetase, putative; (peptide synthetase); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.552
wza
(polysaccharide export protein putative) identified by sequencesimilarity; putative InterPro: Polysaccharide export protein; Specificity unclear.
  
     0.534
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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