Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABO_2092(peptide synthetase, putative); identified by sequence similarity; putative; High confidence in function and specificity. (1824 aa)    
Predicted Functional Partners:
ABO_2094
(MbtH-like protein, putative) by similarity to PFAM family PF03621; Family membership.
 
 
 0.999
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
  
0.959
hemL
(glutamate-1-semialdehyde-21-aminomutase) identified by sequencesimilarity; putative InterPro: Glutamate-1-semialdehyde-21-aminomutase; High confidence in function and specificity.
    
 0.934
yojI
Pyoverdine ABC export systempermease/ATP-binding protein identified by sequence similarity; putative InterPro: ABC transporter transmembrane region; Family membership.
 
  
 0.929
alkK
Medium-chain-fatty-acid CoA ligase; Identified by match to TIGR protein family HMMTIGR01734 InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity.
  
0.923
ABO_2089
L-ornithine N5-oxygenase; Region start changed from 2380063 to 2380003 (-60 bases) region start changed to correct the mistake during contig update.
 
 
 0.918
p450-3
(cytochrome P450, putative) identified by sequencesimilarity; putative InterPro: Cytochrome P450 enzyme; High confidence in function and specificity.
 
 
 0.900
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by sequencesimilarity; putative InterPro: Acyl transferase domain; High confidence in function and specificity.
 
  
 0.885
p450
(oxidoreductase cytochrome p450 family protein) (acting on paired donors with incorporation of molecular oxygen) identified by sequencesimilarity; High confidence in function and specificity.
  
 
 0.881
atfA2
Acyltransferase, homologous to ABO_2742, AtfA1 and to the ACIAD0832, wax ester synthase/ diacylglycerol acyltransferase of Acinetobacter sp. AP1; High confidence in function and specificity.
  
 
 0.881
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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