Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABO_1223 | ABO_2103 | ABO_1223 | ABO_2103 | Conserved hypothetical protein identified by sequencesimilarity; putative. | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.453 |
ABO_1644 | ABO_2103 | ABO_1644 | ABO_2103 | Conserved hypothetical protein; Family membership. | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.416 |
ABO_2102 | ABO_2103 | ABO_2102 | ABO_2103 | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity. | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.455 |
ABO_2102 | pldA | ABO_2102 | ABO_2104 | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity. | Outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. | 0.433 |
ABO_2103 | ABO_1223 | ABO_2103 | ABO_1223 | Conserved hypothetical protein; Belongs to the UPF0434 family. | Conserved hypothetical protein identified by sequencesimilarity; putative. | 0.453 |
ABO_2103 | ABO_1644 | ABO_2103 | ABO_1644 | Conserved hypothetical protein; Belongs to the UPF0434 family. | Conserved hypothetical protein; Family membership. | 0.416 |
ABO_2103 | ABO_2102 | ABO_2103 | ABO_2102 | Conserved hypothetical protein; Belongs to the UPF0434 family. | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity. | 0.455 |
ABO_2103 | kdsB | ABO_2103 | ABO_1057 | Conserved hypothetical protein; Belongs to the UPF0434 family. | 3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.419 |
ABO_2103 | nnrD | ABO_2103 | ABO_2208 | Conserved hypothetical protein; Belongs to the UPF0434 family. | Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...] | 0.468 |
ABO_2103 | pldA | ABO_2103 | ABO_2104 | Conserved hypothetical protein; Belongs to the UPF0434 family. | Outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. | 0.791 |
kdsB | ABO_2103 | ABO_1057 | ABO_2103 | 3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.419 |
nnrD | ABO_2103 | ABO_2208 | ABO_2103 | Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...] | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.468 |
pldA | ABO_2102 | ABO_2104 | ABO_2102 | Outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity. | 0.433 |
pldA | ABO_2103 | ABO_2104 | ABO_2103 | Outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. | Conserved hypothetical protein; Belongs to the UPF0434 family. | 0.791 |