STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2109(short chain dehydrogenase/reductase, putative) identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
ABO_2107
(monooxygenase, putative) identified by sequence similarity; putative InterPro: Flavin-containing monooxygenase (FMO); High confidence in function and specificity.
  
  
 0.839
ABO_2108
(lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity.
  
    0.838
ABO_0959
Oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    0.764
ABO_2112
Dehydrogenase/reductase; Oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.763
ABO_2053
Dehydrogenase/reductase; Dehydrogenases with different specificities identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity.
 
    0.732
ABO_0663
Oxidoreductase (acting on the CH-OH group of donors with NAD+ or NADP+ as acceptor) identified by sequencesimilarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    0.709
ABO_1755
Oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    0.709
ABO_1026
Oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106; Family membership.
 
    0.681
ABO_0990
Oxidoreductase identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership.
 
    0.654
ABO_2106
(transcriptional regulator, putative) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership.
       0.555
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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