Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2118GGDEF domain protein; Identified by sequence similarity; putative InterPro: Domain of unknown function DUF9; Family membership. (409 aa)    
Predicted Functional Partners:
gacS
Sensor/response regulator hybrid; (sensor histidine kinase/response regulator GacS) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 0.942
ABO_2443
Conserved hypothetical protein; Identified by sequencesimilarity.
 
 
 0.907
luxR
DNA-binding response regulator, LuxR family; Identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
 
  
 0.903
ABO_2155
(two-component protein: Na-solute symporter/sensory box histidinekinase/response regulator putative) identified by match to PFAM protein family HMMPF02518 and HMMPF00072; putative InterPro: Sodium:solute symporter family TMHMM: reportin 12 transmembrane helices; Family membership.
  
 
 0.881
ABO_1309
Sensory box protein/response regulator; Identified by sequencesimilarity; putative InterPro: Response regulator receiver domain; High confidence in function and specificity.
 
  
 0.806
ABO_2433
Conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain.
 
 
0.770
ABO_0442
Sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear.
 
 0.710
ABO_1311
Sensory box protein/response regulator identified by sequencesimilarity; putative; Function unclear.
 
 
 0.693
ABO_1243
Sensor histidine kinase containing HisKA, HATPase_c and Response_reg domains, identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; conserved hypothetical protein.
 
 0.676
ABO_1598
Sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear.
 
 0.667
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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