Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2122Hypothetical protein; Predicted by Glimmer/Critica. (83 aa)    
Predicted Functional Partners:
ABO_2121
Hypothetical protein; Predicted by Glimmer/Critica.
       0.741
ABO_2123
(transcriptional regulator, putative) identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family HTH reporting nucleic acid binding motif; Family membership.
       0.574
cysJ
NADPH-sulfite reductase; Identified by sequence similarity. InterPro: FAD-binding domain; High confidence in function and specificity.
       0.414
cysI-1
Sulfite reductase (NADPH); Identified by similarity to Pfam protein families PF01077 and PF03460 InterPro: Nitrite and sulfite reductase; High confidence in function and specificity.
       0.414
cysI-2
Sulfite reductase (NADPH); (cysI-2); identified by similarity to Pfam protein families PF01077 and PF03460; High confidence in function and specificity.
       0.414
ABO_2127
DsrE/DsrF-like family protein, Pfam:DrsE; Family membership.
       0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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