Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2132Chemotaxis sensory transducer family protein; Identified by match to PFAM protein family HMMPF02743 InterPro: Metal dependent phosphohydrolase HD domain; Family membership. (520 aa)    
Predicted Functional Partners:
ABO_2433
Conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain.
 
 
 0.795
ABO_2691
Sensory box protein; Identified by match to PFAM protein family HMMPF03466 InterPro: Domain of unknown function 2; Function unclear.
 
 
 
 0.676
ABO_2443
Conserved hypothetical protein; Identified by sequencesimilarity.
 
 
 0.672
gacS
Sensor/response regulator hybrid; (sensor histidine kinase/response regulator GacS) identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
 0.627
ABO_2131
Peptidase, M23/M37 family; Region start changed from 2434194 to 2434095 (-99 bases).
       0.623
ABO_0435
Unnamed protein product; Specificity unclear; adenylate cyclase family protein identified by Glimmer2; putative InterPro: Guanylate cyclase.
 
 
   0.561
ABO_0823
Conserved hypothetical protein GGDEF domain.
 
  
 0.556
rre2
GGDEF domain protein; Identified by sequence similarity; putative InterPro: Domain of unknown function DUF9; High confidence in function and specificity.
 
  
 0.549
ABO_1307
Sensor histidine kinase/respose regulator, contains HisKA, HATPase_c and two Response_reg receiver domains; identified by sequencesimilarity; putative InterPro: Histidine kinase C-terminal; Family membership.
 
 
 0.548
rrp-1
Response regulator; Identified by match to PFAM protein family HMMPF00990 InterPro: Domain of unknown function DUF9; Family membership.
 
  
 0.521
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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