Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2138TonB-dependent receptor; Identified by match to PFAM protein family HMMPF00593; Specificity unclear. (689 aa)    
Predicted Functional Partners:
ABO_1104
Outer membrane siderophore receptor putative identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Function unclear.
  
   
 0.728
ABO_2139
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.654
fpvA
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative Interpro:; Family membership.
  
  
 0.586
fpvB
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Family membership.
  
  
 0.576
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
  
 
 0.536
ABO_0757
Conserved hypothetical protein, has certain similarity to proline-rich C-terminus of TolA (PA0971) of Pseudomonas aeruginosa PAO1.
  
 
 0.536
tonB2
Ferric siderophore transport system,periplasmicbinding prot; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.536
fhuA
Ferrichrome-iron receptor precursor (Ferric hydroxamate uptake) (Ferric hydroxamate receptor)., TonB-dependent siderophore receptor, TonB-dependent Receptor Plug Domain, TonB-siderophor: TonB-dependent siderophore receptor; High confidence in function and specificity.
  
  
 0.533
fhuE
Outer membrane ferric siderophore receptor identified by sequencesimilarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
  
  
 0.502
ABO_1692
Uncharacterized protein conserved in bacteria (COG 3295).
  
   
 0.495
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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