STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dctQ-2TRAP-type C4-dicarboxylate transport system, small permease component. identified by sequence similarity. Pfam:Tripartite ATP-independent periplasmic transporters,DctQ component TMHMM: reporting 5 transmembrane helices; High confidence in function and specificity. (207 aa)    
Predicted Functional Partners:
dctM-2
TRAP-type C4-dicarboxylate transport system, dctM subunit. Identified by sequence similarity; putative TMHMM: reporting 9 transmembrane helices TIGRFAM:dctM; High confidence in function and specificity.
 
 
 0.956
dctQ
(TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; putative TMHMM reporting 4 transmembrane helices; High confidence in function and specificity.
  
  
 
0.924
gtrA
TRAP-type sodium-dependent glutamate permease integral membrane protein (small) Pfam: Tripartite ATP-independent periplasmic transporters, DctQ component TMHMM: reporting 4 transmembrane helices; High confidence in function and specificity.
     
  0.900
dctP-2
TRAP dicarboxylate transporter DctP subunit. identified by sequencesimilarity. Pfam: SBP_bac7: Bacterial extracellular solute-binding protein, family 7; Family membership.
 
  
 0.858
dctM
(TRAP dicarboxylate transporter DctM subunit putative) identified by sequence similarity; putative InterPro: DedA family TMHMM reporting 11 transmembrane helices; Family membership.
 
 
 0.820
dctP
(TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; putative; Family membership.
 
  
 0.701
ABO_1762
Hypothetical protein; Identified by sequence similarity.
 
 
 0.595
ectA
DABA acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.
 
     0.526
ectB
Diaminobutyrate-pyruvate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.447
ectC
Ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
 
     0.438
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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