STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2153Conserved hypothetical protein. (401 aa)    
Predicted Functional Partners:
ABO_2155
(two-component protein: Na-solute symporter/sensory box histidinekinase/response regulator putative) identified by match to PFAM protein family HMMPF02518 and HMMPF00072; putative InterPro: Sodium:solute symporter family TMHMM: reportin 12 transmembrane helices; Family membership.
 
 
 0.638
ABO_1111
(tesA)(acyl-CoA thioesterase II) identified by match to PFAM protein family HMMPF02551; High confidence in function and specificity.
  
     0.552
degU
Transcriptional regulatory protein degu (protease production enhancer protein); Identified by sequence similarity; putative InterPro: Response regulator receiver domain; Family membership.
 
    0.468
ABO_0491
Conserved hypothetical protein.
  
     0.467
ydaH
(Putative p-aminobenzoyl-glutamate transporter) identified by match to PFAM protein family ABG_transport; Family membership.
  
     0.457
ABO_1516
vacJ lipoprotein, putative; (vacJ) (vacJ lipoprotein) VacJis attached to the outer membrane by a lipid anchor (by similarity); Function unclear.
   
 
 0.449
ABO_2491
Hypothetical protein.
  
 
 0.414
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.