Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_2156(nuclease, putative) identified by match to TIGR protein family HMMTIGR00573 InterPro: Exonuclease; Family membership. (173 aa)    
Predicted Functional Partners:
ABO_2157
CBS domain protein; Identified by sequence similarity; putative; Family membership.
 
    0.976
dnaE
DNA polymerase III, alpha subunit; Identified by match to PFAM protein family HMMPF02811 InterPro: DNA polymerase III alpha subunit; High confidence in function and specificity.
   
 0.947
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.943
dnaX
DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
    
 0.941
holA
DNA polymerase III, delta subunit; Identified by sequencesimilarity; putative; High confidence in function and specificity.
    
 0.932
holB
DNA polymerase III, delta prime subunit; High confidence in function and specificity.
    
 0.927
holC
DNA polymerase III, chi subunit; Identified by sequencesimilarity; putative; High confidence in function and specificity.
   
 0.914
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
     
  0.900
ABO_2158
Putative sodium/solute symporter; Na+/solute symporter, Sodium:solute symporter family, sss: SSS sodium solute transporter superfamily; Hypothetical protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.822
ABO_2159
Hypothetical protein.
 
     0.550
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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