Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2184Conserved hypothetical protein. (260 aa)    
Predicted Functional Partners:
ABO_2183
Mercuric reductase, putative; (soluble pyridine nucleotide transhydrogenase) identified by sequencesimilarity; putative InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase belongs to the class-i of pyridine nucleotide- disulfide oxidoreductase family; High confidence in function and specificity.
 
     0.861
ABO_1812
Conserved hypothetical protein; InterPRO: Uncharacterized BCR (DUF703).
 
     0.715
ABO_2182
Arsenic (+3 oxidation state) methyltransferase; SAM (and some other nucleotide) binding motif; High confidence in function and specificity.
 
     0.662
ABO_1813
Conserved hypothetical protein.
 
     0.621
ABO_1814
(hypothetical protein) identified by match to PFAM protein family HMMPF04055.
 
     0.611
ABO_1008
Uncharacterized protein conserved in bacteria.
 
     0.500
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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