Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dadXAlanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (353 aa)    
Predicted Functional Partners:
ddlB
D-alanine-D-alanine ligase B; Cell wall formation.
 
 
 0.968
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.955
dat
(D-alanine aminotransferase, D-aspartate aminotransferase, D-amino acid aminotransferase, D-amino acid transaminase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF01063 InterPro: Aminotransferases class-IV; High confidence in function and specificity.
    
 0.925
glnA
(glutamine synthetase type I, glutamate-ammonia ligase) identified by sequence similarity; putative identified by match to TIGRFAM protein family HMMTIGR00653; High confidence in function and specificity.
     
 0.825
ABO_1183
(aminotransferase, putative) identified by match to PFAM protein family HMMPF00155; putative InterPro: Aminotransferases class-I; Family membership.
    
 0.810
gltB
Glutamate synthase, large subunit; Identified by sequencesimilarity; putative identified by match to PFAM protein family HMMPF04897 and HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; High confidence in function and specificity.
    
  0.809
gdhA-2
(glutamate dehydrogenase, NAD(P)-specific glutamate dehydrogenase) identified by sequence similarity; putative identified by match to PFAM protein families HMMPF02812 and HMMPF00208 InterPro: Glutamate/leucine/phenylalanine/valine dehydrogenase; High confidence in function and specificity; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.806
ABO_1595
NAD-glutamate dehydrogenase; Region start changed from 1824508 to 1824409 (-99 bases).
     
  0.800
gltD
(glutamate synthase small subunit, glutamate synthase beta subunit) identified by sequence similarity; putative; High confidence in function and specificity.
     
  0.800
ABO_0470
Oxidoreductase FAD-binding identified by sequencesimilarity; putative InterPro: D-amino acid oxidase; Function unclear.
  
  
 0.729
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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