STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2195Hypothetical protein; (multidrug efflux RND transporter putative) identified by match to TIGR protein family HMMTIGR00915. (556 aa)    
Predicted Functional Partners:
ABO_2196
Conserved hypothetical protein, predicted phosphatase.
 
     0.924
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.669
oprF
(outer membrane protein OprF; OmpA domain protein) identified by sequence similarity; putative InterPro: Bacterial outer membrane protein; High confidence in function and specificity.
 
 
 0.475
rlpA
Lipoprotein, rare lipoprotein A family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.440
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
    0.418
pal
Peptidogycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.405
ABO_1411
OmpA family protein; Identified by match to PFAM protein family HMMPF00691 InterPro: Bacterial outer membrane protein; Family membership.
  
 
 0.405
ABO_1527
OmpA family protein; InterPro: Bacterial outer membrane protein; Family membership.
  
 
 0.405
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.