Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gltBGlutamate synthase, large subunit; Identified by sequencesimilarity; putative identified by match to PFAM protein family HMMPF04897 and HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; High confidence in function and specificity. (1487 aa)    
Predicted Functional Partners:
fadH
(2,4-dienoyl-CoA reductase FadH) identified by sequencesimilarity; putative InterPro: NADH:flavin oxidoreductase/NADH oxidase; High confidence in function and specificity.
  
 
 0.999
gltD
(glutamate synthase small subunit, glutamate synthase beta subunit) identified by sequence similarity; putative; High confidence in function and specificity.
 0.999
gdhA-2
(glutamate dehydrogenase, NAD(P)-specific glutamate dehydrogenase) identified by sequence similarity; putative identified by match to PFAM protein families HMMPF02812 and HMMPF00208 InterPro: Glutamate/leucine/phenylalanine/valine dehydrogenase; High confidence in function and specificity; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.979
glnA
(glutamine synthetase type I, glutamate-ammonia ligase) identified by sequence similarity; putative identified by match to TIGRFAM protein family HMMTIGR00653; High confidence in function and specificity.
  
 
 0.977
carB
(carbamoyl-phosphate synthase large subunit, carbamoyl- phosphate synthetase ammonia chain) identified by sequence similarity; putative identified by match to PFAM protein families HMMPF02786 and HMMPF00289 InterPro: Carbamoyl-phosphate synthase; High confidence in function and specificity.
  
 
 0.969
glmS
Glucosamine 6-phosphate synthase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.965
ABO_1595
NAD-glutamate dehydrogenase; Region start changed from 1824508 to 1824409 (-99 bases).
     
 0.946
aspC
(aspartate aminotransferase, transaminase A) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; High confidence in function and specificity.
    
 0.940
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.935
carA
(carbamoyl-phosphate synthase small subunit, carbamoyl-phosphate synthetase glutamine chain) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00988; putative InterPro: Glutamine amidotransferase class-I; High confidence in function and specificity; Belongs to the CarA family.
    
  0.932
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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