Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilQFimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein. (723 aa)    
Predicted Functional Partners:
pilN-2
Type IV pili biogenesis protein PilN.
 
 
 0.994
pilP
Type 4 fimbrial biogenesis protein PilP.
 
 
 0.993
pilM
Type IV fimbrial biogenesis protein PilM.
 
 
 0.985
pilO
Type 4 fimbrial biogenesis protein pilO.
 
 
 0.982
ABO_0132
LysM domain protein; Region start changed from 142733 to 142994 (-261 bases).
 
 
 
 0.959
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.849
pilZ
Type IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity.
  
   
 0.842
pilF
Type IV pili biogenesis protein PilF; Identified by match to PFAM protein family HMMPF00515 InterPro: TPR repeat; Family membership.
 
   
 0.809
tapC
Type IV pilus assembly protein TapC; Identified by sequence similarity; Family membership.
 
 
 
 0.780
ABO_0468
Secretion protein putative identifiedby sequence similarity; putative InterPro: Fimbrial protein pilin; High confidence in function and specificity.
 
   
 0.771
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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