Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2267Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04093. (511 aa)    
Predicted Functional Partners:
ABO_2266
Conserved hypothetical protein; Identified by Glimmer2; putative.
    0.968
ABO_2268
Conserved hypothetical protein; Identified by sequence similarity; putative.
 
    0.949
ABO_2412
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 
    0.803
ABO_2265
Conserved hypothetical protein; InterPro: Sulfatase.
       0.610
ABO_2261
(conserved hypothetical protein) identified by sequencesimilarity; putative.
 
     0.523
ABO_0586
Lipoprotein, putative; Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate; Function unclear.
  
    0.480
typA
GTP-binding protein TypA/BipA; Identified by match to TIGR protein family HMMTIGR01394 InterPro: GTP-binding elongation factor; High confidence in function and specificity.
       0.439
ABO_2263
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
       0.429
trmU-2
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Identified by sequencesimilarity; High confidence in function and specificity.
       0.425
ABO_0950
Conserved hypothetical protein; Function unclear.
  
     0.404
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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