Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_2293(permease and transmembrane protein, putative); identify by sequence similarity to PFAM, PB096426 PB094699 PB074947 PB047492 PB044947 PB037484 PB001524; conserved hypothetical protein. (437 aa)    
Predicted Functional Partners:
waaF
(ADP-heptose--LPS heptosyltransferase II, putative); identify by similarity to InterPro IPR002201 and PFAM protein family PF01075. InterPro IPR002201; Glyco_trans_9. lipopolysaccharide core biosynthesis; High confidence in function and specificity.
       0.520
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.502
ABO_2294
Conserved hypothetical protein; Identify by sequence similarity KDO kinase-like domain.
       0.498
ABO_2295
Glycosyltransferase; (yibd) (glycosyl transferase group 2 family protein) identified by match to PFAM protein family HMMPF00535; High confidence in function and specificity.
       0.498
waaP2
Lipopolysaccharide core kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
       0.498
waaG
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase; (rfag) (lipopolysaccharide core biosynthesis protein, glucosyltransferase family 1) identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; High confidence in function and specificity.
       0.498
waaC
(heptosyltransferase I); High confidence in function and specificity.
       0.498
waaP1
Lipopolysaacharide kinase; Identified by sequence similarity; Family membership.
       0.498
glnE
Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
       0.422
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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