STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2303(type II secretion system protein, putative) identified by sequence similarity and match to PFAM protein family HMMPF00437 Type II traffic warden ATPase; Pectic enzymes secretion protein outE InterPro: Bacterial type II secretion system protein E; Family membership. (603 aa)    
Predicted Functional Partners:
tapC
Type IV pilus assembly protein TapC; Identified by sequence similarity; Family membership.
 
 
 0.933
gspF
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership.
 
 
 0.933
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.912
pilD
Leaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.857
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.815
gspG
Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane.Belongs to the GSP G family; Family membership.
 
 
 0.776
gspI
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP I family,identified by sequence similarity InterPro: Bacterial type II secretion system protein I/J; Family membership.
  
 
 0.607
ABO_0433
(xcpQ) (type II secretion pathway protein XcpQ) identified by sequence similarity; putative InterPro: General (type II) secretion pathway (GSP) D protein; Function unclear.
 
  
 0.603
gspH
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP H family, by sequence similarity; Family membership.
  
 
 0.584
pilZ
Type IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity.
    
 
 0.547
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.