STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2314Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01124. (185 aa)    
Predicted Functional Partners:
ABO_2315
Oxidoreductase iron-sulfur-binding identified by match to PFAM protein family HMMPF00970; Family membership.
       0.773
nahD
2-hydroxychromene-2-carboxylate isomeraseputative identified by sequencesimilarity; putative InterPro: 2-hydroxychromene-2-carboxylate isomerase; High confidence in function and specificity.
 
     0.668
ABO_2316
Paraquat-inducible protein A; Function unclear.
       0.497
ABO_2317
(PqiB family protein) identified by sequence similarity; putative; Family membership.
       0.497
ABO_2318
Conserved hypothetical protein.
       0.497
ABO_1484
Conserved hypothetical protein; Identified by match to TIGR protein family HMMTIGR01738; Family membership.
  
     0.432
phaD
phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity.
  
    0.401
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.