Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hemYhemY protein; Identified by sequence similarity; putative InterPro: TPR repeat; Hypothetical protein. (410 aa)    
Predicted Functional Partners:
hemX
uroporphyrin-III C-methyltransferase, putative; Identified by sequence similarity; putative; Hypothetical protein.
 
  
 0.982
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
   
 0.716
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.650
ABO_0520
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
     0.647
ABO_2243
Conserved hypothetical protein.
 
     0.625
ABO_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.606
ABO_1858
Conserved hypothetical protein; Identified by sequence similarity; putative.
 
     0.600
ABO_2284
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.575
ABO_0586
Lipoprotein, putative; Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate; Function unclear.
  
     0.570
ABO_2247
Conserved hypothetical protein.
  
     0.516
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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