STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2357Transporter, LysE family; Identified by match to PFAM protein family HMMPF01810; putative InterPro: Lysine exporter protein (LYSE/YGGA); Family membership. (220 aa)    
Predicted Functional Partners:
ABO_2587
Transporter, LysE family; Identified by sequence similarity and by match to PFAM protein family HMMPF01810; putative InterPro: Lysine exporter protein (LYSE/YGGA); Family membership.
  
  
 0.783
ABO_2358
Hypothetical protein.
       0.773
pcoA
(copper resistance protein A) identified by sequencesimilarity; putative InterPro: Multicopper oxidase type 1; High confidence in function and specificity.
       0.655
pcoB
(copB) (copper resistance protein B); High confidence in function and specificity.
       0.655
ABO_2354
Hypothetical protein; Predicted by Glimmer/Critica.
 
     0.495
ABO_2356
Predicted metal-binding protein (conserved hypothetical protein) identified by match to PFAM protein family HMMPF04214.
       0.477
copA-2
Copper-transporting P-type ATPase (EC 3.6.3.4); High confidence in function and specificity.
     
 0.418
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.